Document
In silico screening of SARS-CoV2 helicase using African natural products: Docking and molecular dynamics approaches
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Elsabbagh, S.A, Author
Shehata, M.A, Author
Eldehnam, W.M, Author
Bekhit, A.A, Author
Ibrahim, T.M, Author
Title of Periodical
Virology
Country of Publication
Kingdom of Bahrain
Place Published
Sakhir, Bahrain
Publisher
University of Bahrain
Date Issued
2023
Language
English
English Abstract
ABSTRACT:
In the current medical era, there is an urgent necessity to identify new effective drugs to enrich the COVID-19’s therapeutic arsenal. The SARS-COV-2 NSP13/helicase enzyme has been identified as a potential target for developing novel COVID-19 inhibitors. In this work, we aimed at endorsing effective natural products with potential inhibitory action towards the NSP13 through the virtual screening of 1012 natural products of
botanical and marine origin from the South African Natural Compounds Database (SANCDB). The molecules were docked into the NTPase active site, and the best twelve compounds were chosen for further analysis. Thereafter, a combination of molecular dynamics simulations and MM-GBSA free energy calculations were carried out for a subset of best hits complexed with NSP13 helicase. We believe that the findings of this work will pave the way for additional research and experimental validation of some natural products as viable NSP13 helicase inhibitors.
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Identifier
https://digitalrepository.uob.edu.bh/id/3571c804-c1e0-4838-827a-7aa3d8aee545
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